Article Publishing History Article Received on : 12 Dec 2023 Article Accepted on : 25 Jan 2024 Article Published : 21 Mar 2024 Plagiarism Check: Yes Reviewed by: Dr. Guru Swamy B Second Review by: Dr. Mahima Mittal Final Approval by: Dr. Kishor Govindrao Rewatkar
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ABSTRACT:
In an attempt to enhance electrical conductance and improve the formation probability of a molecular junction, a hybrid method was established. Charge transport and conductance-length dependence (exponential decay) in hybrid acene-based molecular junctions was investigated using Density Functional Theorem (DFT) in combination with Non-equilibrium Green’s Function (NEGF) formalism. To diversify the electrical characteristics and device architectures of molecular junctions using heterogeneous structures, to achieve desirable electronic functionalities the low level acene were used to investigate such functionalities. The transmission coefficients T(E), the Frontier Molecular Orbitals (FMO) in consideration of their gap (HOMO-LUMO gap) and the electrical conductance-length dependency were investigated. The results show that hybrid molecular junctions enhanced electrical conductance and is recommended for anthracene and pentacene molecules. It also show that the anchoring materials have a significant effects on the HOMO-LUMO gap of the junction. It is also observed that the hybrid molecular junctions show a non-exponential conductance decay. Lastly, we recommend that the practical implementation of these hybrid molecular junction will bring about a lot discoveries of functionalities and applications in nano electrical circuits.
KEYWORDS:
Anthracene; Conductance; DFT; HOMO; LUMO; NEGF; transmission; tetracene
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Ibrahim K. L, Babaji G, Galadanchi G. S. M, Enhancing Electrical Conductance in Acene-Based Molecular Junctions: A Hybrid Approach. Mat. Sci. Res. India;21(1).
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Ibrahim K. L, Babaji G, Galadanchi G. S. M, Enhancing Electrical Conductance in Acene-Based Molecular Junctions: A Hybrid Approach. Mat. Sci. Res. India;21(1). Available from: https://bit.ly/498q9Dj
Introduction
In recent years, there has been significant interest in the study of charge transport in molecular junctions (MJs). These systems consists of a molecule sandwiched between two metal electrodes. Understanding the nature of charge transport across these interfaces is of crucial importance for the improvement in molecular electronics. One class of molecules that has been studied as potential candidates for MJs is the acene family1, which includes molecules such as anthracene, tetracene and pentacene. Acenes belong to the family of aromatic compounds that have received significant consideration for invention of electronic devices2,3. These molecules have extended π-conjugation, which allows for efficient charge delocalization and transport. Acenes and polyacenes are capable for charge transport due to the strong conjugation between the benzene rings4. Moreover, they represent good model structures for understanding the properties of more complex configurations5,6.
Some studies have shown that transport properties like conductance (G) depend on the system length7. At long-range, the molecular conductance generally indicates a linear length dependence linked with thermal activation and described by an illogical mechanism8. At short-range, the transport does not depend on the temperature9. At this range, the conductance exhibits an exponential decay with length of molecule and it is represented by equation 1 below10.
where L is the molecular length, A is a prefactor that depends on the molecule-electrode contact, and β is the decay (attenuation) factor related to the tunneling barrier of the molecular region. The fast degeneration of the conductance with molecular length (Equation 1) restricts the formation of molecular-based electronic components. Some previous studies,9,11,12 show the conductance of a chains of carbon-based compounds without anchoring groups. In these studies the electrodes are joined directly to the π-orbital organic molecules and revealed a conductance to be high and independent of molecular length with a very low formation probability. Another study analyzed the conductance of a molecules connected to electrodes via anchoring groups predicted a near length-independent conductance13. Other studies have compared the conductance of MJs with anchoring groups showing that the anchoring design governs the electron transport path. These MJs has a high formation probability but low conductance value.14,15
In an attempt to enhance electrical conductance of a MJs, and improve its formation probability at the same time, a hybrid method was established. Charge transport in hybrid molecular junctions has been a topic of recent research interest.16,17 Hybrid molecular inorganic junctions have been investigated, showing a transition in the charge transport mechanism associated with the spin state conversion of the embedded spin crossover complex.11
In this study, a combination of density functional theory (DFT) calculations and the non-equilibrium Green’s function (NEGF) formalism were employed to investigate the charge transport properties of a hybrid acene-based MJs. DFT calculations are used to determine the electronic structure of the molecules and its interaction with the electrodes. This involves solving the Kohn-Sham equations to obtain the energy levels and wavefunctions of the system. The HOMO (Highest Occupied Molecular Orbital) and LUMO (Lowest Unoccupied Molecular Orbital) energy levels of the acene molecules are crucial in understanding the charge transport behavior. The energy alignment of these levels with respect to the Fermi levels of the electrodes determines the charge injection and extraction process at the electrode-molecule interfaces. NEGF calculations are then performed to obtain the transmission spectrum. These theoretical investigations compliment experimental efforts and facilitate the design and optimization of molecular devices for various electronic applications.
Figure 1: Acene-based MJs with single contact to electrodes via amines anchor group.
This work involves a modelling of the extended structure, energy band calculations as well as charge transport simulations. Modellings of the structures was done using modelling and visualization software called Jmol. Figure 1, illustrates some of the MJs formed using some members of an acene group. Throughout this work, gold (Au) was maintained as an electrodes (leads/reservoirs) and they are connected in para-positions18. The structure optimization and energy band calculations were performed using DFT technique as implemented in FHI-aims computer code19, with the Perdew-Burke-Ernzerhof (PBE) exchange correlation functional. Transport properties of the system were investigated using Non-equilibrium Green’s Function (NEGF) formalism approach as implemented in the Aitranss computer code20, 21, 22.
In the first phase, Hybrid MJs was investigated by comparing its properties to those that are made up using direct π-electrode contacts and π-anchor-electrode bindings. The first three acene member (i.e., anthracene, tetracene and pentacene) molecules connected to Au electrode via different anchoring groups23 were considered. The anchoring materials used are amine (-NH2), cyanide (-CN), sulphur (-S) and thiol (-SH). Figure 1 and 2 illustrate how an anchoring groups are connected to a) anthracene b) tetracene and c) pentacene molecules in a single and hybrid modes respectively. In the second phase, exponential decay and length dependence of the electrical conductance of the hybrid MJs was investigated16, 24.
DFT is based on quite a rigid conceptual frame work. For many-body problem, the Schrondinger equation becomes
It is assumed that the full Hamiltonian of the extended molecule (Figure 2) has been subject to partitioning into a sub-system M (molecule), a reservoir, M, and a mutual coupling.
The coupling V is of the form V = ∑_m,k vmk dm†ck + H.c. while dm†, and dm denote the creation/annihilation operators in M Hilbert space and ck†, ck the counterparts in R space.
For a small voltage and low temperature limit, the electrical conductance Geof the molecular junction can be express as
Where Go is the quantum of electrical conductance and has a value of 2e2/h ≈ 77.48μS, E is energy τe (E) is the transmission function for electrons passing from one electrode to the other electrode via the molecule (which can also be written as T) and EF is the Fermi energy (chemical potential) of the electrode material. Therefore, from equation (4) above, we have10;
Figure 2: Double contact (Hybrid) acene-based MJs with amines as anchor groups (a. anthracene MJ, b. tetracene MJ and d. Pentacene MJ).
The results are presented in two different segments. In the first segment, a comparative study between MJs formed without anchoring materials, the others that the anchoring materials were used as well as the double-contact version (hybrid). In the second segment, conductance-length dependence as stated by equation 1 above was scrutinized.
Double Contact (Hybrid MJs)
To improve the conductance as well as the formation probability of MJs, the hybrid (double-contact) MJs are formed. This is designed as a combination of direct-contact model and that of using anchor group simultaneously. In this mode, the charge transport path is assign via direct π-electrode binding, whereas, the anchoring of the molecule with the metal electrode is assign via molecule-anchor-electrode path. Design, synthesis and structural characterization were performed. These MJs are anchored via four different anchoring groups.
Anthracene
Figure 3: Variation of a transmission of an anthracene MJs with direct, anchor and double- contact (hybrid) molecule-electrodes intercept.
As it can be noticed in Figure 5a, the hybrid MJ has the highest value of T(EF) which is around 1.83, thus it has a higher conductance. The direct contact had T(EF) value of 1.56, and then that with anchor material with T(EF) value of 0.98. When a cyanides anchor is used (b), the similar results was obtained. The hybrid MJ has T(EF) value of 3.04 followed by the direct contact and then with anchor material whose T(EF) value is 0.95. For sulphides anchor material (c), the T(EF) value of hybrid MJ is 1.61 and that of the anchor binding is 0.94. Lastly, for the thiol anchoring, hybrid MJ has T(EF) value of 0.31 while the anchoring binding has 0.88.
Figure 4, is the frontier orbitals energies for the hybrid anthracene MJs formed using four different anchor materials. The HOMO-LUMO gap of these compounds decreases significantly from 0.049 to 0.008 eV. It can be seen that, the sulphides anchor MJ, the gap has wider gap followed by cyanides and thiols with gap of 0.018 and 0.012 respectively. MJ made up with amines as anchor group has a least HOMO-LUMO gap of 0.008.
Figure 4: Variation of the Frontier Molecular Orbitals (HOMO and LUMO) of anthracene hybrid MJs with anchoring materials.
For the tetracene MJs, the transmission coefficients T(E) for a MJs formed using direct-contact, π-anchor and hybrid methods against energy (E) are displayed in Figure 5 (a-d). In these figures, the MJs are designed using amines,cyanides, sulphides and thiols as anchor groups respectively.
Figure 5: Variation of a transmission of tetracene MJs with direct, anchor and double-contact (hybrid) molecule-electrodes intercept.
As it can be observed, the transmission of a tetracene MJ using direct method is 0.021. When amines was used as molecule-electrode anchor (a), the T(EF) value rises to 0.59 and for a hybrid MJ, the T(EF) falls to 0.18. For the cyanides anchor tetracene MJs (b), the T(EF) value is 0.91, while it is 0.32 for its hybrid. When the sulphides anchor groups are applied, the T(EF) value is 0.35, while it is 0.89 for its hybrid form. Lastly, the T(EF) value for tetracene MJ with thiols anchor group is 0.23 and it is 0.19 for the hybrid.
Figure 6: Variation of the Frontier Molecular Orbitals (HOMO and LUMO) of tetracene hybrid MJs with anchoring materials
The figure above (Figure 6), shows the variation of HOMO and LUMO and their relative gap (HOMO-LUMO gap) with respect to the type of an anchoring material used. The maximum gap here is 0.078 eV for the thiols anchor group. Here also, the amines anchor hybrid MJ had the minimum HOMO-LUMO gap of 0.002 eV. Sulphides and cyanides anchored hybrid MJs has 0.053 and 0.013 eV respectively.
Pentacene
Pentacene is the next member of acene after tetracene. Here also, the MJs are formed using a pentacene molecules the same way as the anthracene and tetracene. The transmission coefficients at Fermi energy level T(EF) are presented in figure 7 below. The direct π-electrode, π-anchor-electrode and the hybrid modes of MJs are investigated here.
Figure 7: Transmission coefficient versus energy of pentacene MJs with direct, anchor and double-contact (hybrid) molecule-electrodes binding
For direct contact mode, the transmission coefficient at Fermi energy of an electrode T(EF) is 0.071. When amines anchor groups are used, the T(EF) is 0.12 and it is 0.42 for the hybrid MJ. The T(EF) of cyanides anchored MJ is 0.38, while it is 0.56 for the hybrid. For the sulphides and thiol anchored MJs, the T(EF) values are 0.27 and 0.015 while for their corresponding hybrid MJs, it is 1.07 and 0.30 respectively.
Figure 8: Variation of the Frontier Molecular Orbitals (HOMO and LUMO) of pentacene hybrid MJs with anchoring materials.
The frontier molecular orbitals of a hybrid pentacene MJs varies according to the anchor group used in forming it. Thiols anchor group has the widest HOMO-LUMO gap of 0.16 eV. Next to this amount is sulphides anchor group with gap of 0.023 eV. Amines and cyanides anchor groups are having the least gap with 0.018 and 0.017 respectively.
Length Dependence in Acene-based MJs
Here, the length dependency and exponential decay (equation 1) was investigated. The conductance at zero bias of the compounds anchored in different configurations (i.e., direct, anchor and hybrid) was presented. Figure 9 (a-d) shows the conductance of these MJs within the exponential decay region (N ≤ 5) (Valdiviezo, 2021).
Figure 9: Zero bias conductance of acene-based MJs for different interfaces
For both anchoring groups (amines, cyanides, sulphides and thiols) in Figure 9 (a to d), the hybrid and direct π-electrode did not show any definite conductance decay. The results shows that the conductance does not depends on the molecular length. For the case of π-anchor-electrodes formation, the conductance decays with molecular length except for the case of cyanides anchoring group (Figure 9b). These results shows that, the anchoring materials plays a significant role in the nature of conductance behavior of MJ. It also show that the hybrid MJ does not obey the exponential decay rule in equation 1.
Discussion
The findings show that, apart from improving the formation probability, the hybrid method increases the conductance of an anthracene MJ for all the anchor groups used. Also, the HOMO-LUMO gap varies with the type of anchoring material. It show that the amines anchor material increases the level of the FMOs and has a minimum HOMO-LUMO gap, thus it excites charges more than the other materials and it is recommended to be used in making such MJ.
For the tetracene molecule, the results show that the hybrid method does not improve the conductance of MJs, except for the sulphides anchor group. For the FMOs, the amines anchor group has the least HOMO-LUMO gap even though the energies dropped significantly. Hybrid method of MJ is not recommended with tetracene molecule, but if necessary, the sulphides anchor group should be used even though it has wide HOMO-LUMO gap.
The results also show that, the hybrid method enhanced the conductance as well as the formation probability of pentacene MJ for all the anchor groups used. So also, the HOMO-LUMO gaps are minimum for the amines and cyanides anchoring groups. It is highly recommended to use a hybrid method to make a pentacene MJ with any of amines or cyanides as anchoring material.
Lastly, the results also demonstrate that, the lower acene derivatives have a non-exponential length dependence of the conductance. The connection to the electrodes (coupling) dictates the conductance behavior. This signifies that, the molecules anchored through anchoring materials demonstrated a traditional conductance decay with length, whereas molecules anchored via hybrid method and those with direct π-metal contact exhibit conductance fluctuations with molecular length. Thus, by improving the conductance and overcoming the exponential conductance decay, hybrid MJs will be a very good and cost effective organic molecular components of the next-generation nano electrical circuit.
Conclusion
In conclusion, by using the DFT in combination with NEGF calculations, we have demonstrated that the hybrid method can improve the conductance and formation probability of an anthracene and pentacene MJs. The conductance of tetracene MJ can only be improve when sulphides are used as an anchoring group. Energy band calculations suggested that the anchoring groups influenced the variation of HOMO, LUMO and the gap between them. It shows that for anthracene and pentacene MJs, the amines anchor materials produced a minimum HOMO-LUMO gap. Our results also shows that the hybrid MJs demonstrate a non-exponential conductance decay, but rather it shows a linear dependence in some cases.
Acknowledgement
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References
Gozalvez, C., Zafra, J. L., Saeki, A., Manuel, M., Casado, J., Mateo-Alonso, A. Charge Transport Modulation in Pseudorotaxane 1D Stacks of Acene and Azaacene Derivatives. Chem. Sci., 2019; 10: 2743-2749. https://doi.org/10.1039/C8SC04845B CrossRef
Anthony, J. E. Functionalized acenes and heteroacenes for organic electronics. J. Chem. Rev., 2006; 106: 5028-5048. https://doi.org/10.1021/cr050966z. CrossRef
Thorley, K. J., Anthony, J. E. The electronic nature and reactivity of the larger acenes. Isr. J. Chem., 2014; 54: 642-649. DOI: 10.1002/ijch.201400060. CrossRef
Yang, Y., Davidson, E. R. Yang, W. Nature of ground and electronic excited states of higher acenes. Proc. Natl. Acad. Sci. U. S. A., 2016; 113(35): E5098-E5107. CrossRef
Shen, B., Tatchen, J., Sanchez-Garcia, E., Bettinger, H. F. Evolution of the optical gap in the acene series: undecacene. Angew. Chem., 2018; 13; 57(33): 10506-10509. doi: 10.1002/anie.201802197. CrossRef
Zade, S. S., Bendikov, M. Heptacene and beyond: the longest characterized acenes. Angew. Chem., Int. Ed., 2010; 49: 4012-4015. https://doi.org/10.1002/anie.200906002. CrossRef
Bendikov, M., Wudl, F., Perepichka, D. F. Tetrathiafulvalenes, oligoacenenes, and their buckminsterfullerene derivatives: the brick and mortar of organic electronics. J. Chem. Rev., 2004; 104(11): 4891-4946. https://doi.org/10.1021/cr030666m CrossRef
Nichols, R. J., Haiss, W., Higgins, S. J., Leary, E., Martin, S., Bethell, D. The experimental determination of the conductance of single molecules. Phys. Chem. Chem. Phys., 2010; 12 (12): 2801-2815. https://doi.org/10.1039/B922000c. CrossRef
Yannick, D. J. Attenuation Factors in Molecular Electronics: Some Theoretical Concepts. Journal of Applied Sciences, 2020; 10(18): 6162.; https://doi.org/10.3390/app10186162 CrossRef
Valdiviezo, J., Rocha, P., Polakovsky, A., Palma, J. L. Nonexponential Length Dependence of Molecular Conductance in Acene-Based Molecular Wires ACS Sens., 2021; 26; 6(2): 477-484. doi: 10.1021/acssensors.0c02049 CrossRef
Fujii, S., Madoka, I., Shunsuke, F., Tomofumi, T., Tomoaki, N., Masaichi, S., Manabu, K. Hybrid Molecular Junctions Using Au-S and Au-π Bindings. The Journal of Physical Chemistry C, 2020; 124(17): 9261-9268. https://doi.org/10.1021/acs.jpcc.9b11725 CrossRef
Yelin, T., Korytar, R., Sukenik, N., Vardimon, R., Kumar, B., Nuckolls, C., Evers, F., Tal, O. Conductance saturation in a series of highly transmitting molecular junctions. Nat. Mater., 2016; 15(4): 444-9. doi: 10.1038/nmat4552 CrossRef
Gryn’ova, G., Corminboeuf, C. Topology-Driven SingleMolecule Conductance of Carbon Nanothreads. J. Phys. Chem. Lett., 2019; 10(4): 825-830. https://doi.org/10.1021/acs.jpclett.8b03556 CrossRef
Vincent, D., Valentin, D. C., Colin, V. D., ELke, S., Karine, C., Jerome, C. On the reliability of acquiring molecular junction parameters by Lorentzian fitting I/V curved. Phys. Chem. Chem. Phys., 2020; 22: 26702-26706. https://doi.org/10.1039/D0CP05372D CrossRef
Yoo, P. S., Kim, T. Linker-dependent Junction Formation Probability in Single-Molecule Junctions. Bull. Korean Chem. Soc., 2015; 36(1): 265-268. DOI:10.1002/bkcs.10061 CrossRef
Chen, H., Li, Y., Chang, S. Hybrid Molecular-Junction Mapping Technique for Simultaneous Measurements of Single-Molecule Electronic Conductance and Its Corresponding Binding Geometry in a Tunneling Junction Anal. Chem., 2020; 92(9): 6423-6429. doi: 10.1021/acs.analchem.9b05549 CrossRef
Hu, Y., Zhou, Y., Ye, J., Yuan, S., Xiao, Z., Shi, J., Yang, Y., Gemma, C. S., Hong, W. Σ-dominated charge transport in sub-nanometer molecular junction. J. Fundamental Research, 2022; 2667-3258. https://doi.org/10.1016/j.fmre.2022.06.021. CrossRef
Stegmann, T., Franco-Villafane, J. A., Ortiz, Y. P., Deffner, M., Herrman, C., Kuhl, U., . . . Seligman, T. H. Current vortices in aromatic carbon molecules. Physical Review B, 2020; 102(7): 075405. DOI:https://doi.org/10.1103/PhysRevB.102.075405 CrossRef
Blum, V., Gehrke, R., Hanke, F., Havu, P., Havu, V., Ren, X., Reuter, M. S. Ab initio molecular simulations with numeric atom-centered orbitals. Computer Physics Communications, 2009; 180(11): 2175-2196. DOI:10.1016/j.cpc.2009.06.022 CrossRef
Arnold, A., Weigend, F., Evers, F. Quantum chemistry calculations for molecules coupled to reservoirs: Formalism, implementation, and application to benzenedithiol. The Journal of Chemical Physics., 2007; 126(17): 174101. doi: 10.1063/1.2716664. CrossRef
Wilhelm, J., Walz, M., Stendel, M., Bagrets, A., Evers, F. Ab initio simulations of scanning-tunneling-microscope images with embedding techniques and application to C58-dimers on Au(111). Phys. Chem. Chem. Phys., 2013; 15: 6684-6690. https://doi.org/10.1039/C3CP44286A CrossRef
Bagrets, A. Spin-polarized electron transport across metal-organic molecules: a density functional theory approach. Journal of Chemical Theory and Computation, 2013; 9(6): 2801-45. https://doi.org/10.1021/ct4000263 CrossRef
Reddy, P., Jang, S. –Y., Segalman, R. A., Majumdar, A. Thermoelectricity in molecular junctions. Science, 2007; 315(5818), 1568-1571. doi: 10.1126/science.1137149 CrossRef
Akbarabadi, S.R., Soleimani, H. R., Golsanamlou, Z., Tagani, M. B. Enhanced thermoelectric properties in anthracene molecular device with graphene electrodes: the role of phononic thermal conductance. Scientific Reports. 2020; 10, 10922. DOI: https://doi.org/10.1038/s41598-020-67964-w CrossRef
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